curatedOvarianData

DOI: 10.18129/B9.bioc.curatedOvarianData    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see curatedOvarianData.

Clinically Annotated Data for the Ovarian Cancer Transcriptome

Bioconductor version: 3.8

The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer.

Author: Benjamin F. Ganzfried, Markus Riester, Steve Skates, Victoria Wang, Thomas Risch, Benjamin Haibe-Kains, Svitlana Tyekucheva, Jie Ding, Ina Jazic, Michael Birrer, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron

Maintainer: Levi Waldron <lwaldron.research at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("curatedOvarianData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedOvarianData")

 

PDF	R Script	curatedOvarianData_vignette.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	CancerData, ExperimentData, MicroarrayData, OvarianCancerData, RNASeqData
Version	1.20.1
License	Artistic-2.0
Depends	R (>= 2.10.0), affy
Imports	BiocGenerics
LinkingTo
Suggests	survival, RUnit, metafor, genefilter, logging, sva, xtable, futile.logger, BiocStyle
SystemRequirements
Enhances
URL	http://bcb.dfci.harvard.edu/ovariancancer
Depends On Me
Imports Me
Suggests Me	doppelgangR, simulatorZ
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	curatedOvarianData_1.20.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/curatedOvarianData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/curatedOvarianData
Package Short Url	http://bioconductor.org/packages/curatedOvarianData/
Package Downloads Report	Download Stats