TimerQuant

DOI: 10.18129/B9.bioc.TimerQuant    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see TimerQuant.

Timer Quantification

Bioconductor version: 3.8

Supplementary Data package for tandem timer methods paper by Barry et al. (2015) including TimerQuant shiny applications.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at embl.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("TimerQuant")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TimerQuant")

 

PDF	R Script	Supplementary Methods - automatic generation of paper figures
PDF	R Script	Supplementary Methods - mathematical derivations
PDF		Reference Manual

Details

biocViews	Danio_rerio_Data, ExperimentData, HighThroughputImagingData, Tissue
Version	1.12.0
License	Artistic-2.0
Depends	shiny
Imports	ggplot2, grid, gridExtra, deSolve, dplyr, locfit
LinkingTo
Suggests	BiocStyle, reshape2, knitr, shinyBS
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TimerQuant_1.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/TimerQuant
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TimerQuant
Package Short Url	http://bioconductor.org/packages/TimerQuant/
Package Downloads Report	Download Stats