HiCDataHumanIMR90

DOI: 10.18129/B9.bioc.HiCDataHumanIMR90    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see HiCDataHumanIMR90.

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Bioconductor version: 3.8

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

Author: Nicolas Servant

Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("HiCDataHumanIMR90")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataHumanIMR90")

 

PDF	R Script	HiC Data Human Fibroblast Dixon et al. 2012
PDF		Reference Manual

Details

biocViews	ExperimentData, GEO, Genome, Homo_sapiens_Data
Version	1.2.0
License	GPL-3
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests	HiTC
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	HiTC
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HiCDataHumanIMR90_1.2.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/HiCDataHumanIMR90
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HiCDataHumanIMR90
Package Short Url	http://bioconductor.org/packages/HiCDataHumanIMR90/
Package Downloads Report	Download Stats