XtraSNPlocs.Hsapiens.dbSNP144.GRCh38

DOI: 10.18129/B9.bioc.XtraSNPlocs.Hsapiens.dbSNP144.GRCh38    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see XtraSNPlocs.Hsapiens.dbSNP144.GRCh38.

Extra SNP locations for Homo sapiens (dbSNP Build 144)

Bioconductor version: 3.8

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("XtraSNPlocs.Hsapiens.dbSNP144.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs
Version	0.99.12
License	Artistic-2.0
Depends	R (>= 2.10), BSgenome
Imports	methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests	Biostrings, BSgenome.Hsapiens.UCSC.hg38, SNPlocs.Hsapiens.dbSNP144.GRCh38
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	BSgenome
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	XtraSNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.12.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	http://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh38/
Package Downloads Report	Download Stats