MafDb.1Kgenomes.phase1.hs37d5

DOI: 10.18129/B9.bioc.MafDb.1Kgenomes.phase1.hs37d5    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MafDb.1Kgenomes.phase1.hs37d5.

Minor allele frequency data from 1000 Genomes Phase 1 for hs37d5

Bioconductor version: 3.8

Store minor allele frequency data from the Phase 1 of the 1000 Genomes Project for the human genome version hs37d5.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MafDb.1Kgenomes.phase1.hs37d5")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version	3.7.1
License	Artistic-2.0
Depends	R (>= 3.0.0), GenomicScores(>= 1.3.19)
Imports	utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
LinkingTo
Suggests	SNPlocs.Hsapiens.dbSNP144.GRCh37
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	GenomicScores, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MafDb.1Kgenomes.phase1.hs37d5_3.7.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	http://bioconductor.org/packages/MafDb.1Kgenomes.phase1.hs37d5/
Package Downloads Report	Download Stats