sigaR

DOI: 10.18129/B9.bioc.sigaR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see sigaR.

Statistics for Integrative Genomics Analyses in R

Bioconductor version: 3.8

Facilitates the joint analysis of high-throughput data from multiple molecular levels. Contains functions for manipulation of objects, various analysis types, and some visualization.

Author: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Maintainer: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sigaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigaR")

 

PDF	R Script	sigaR
PDF		Reference Manual

Details

biocViews	DifferentialExpression, GeneExpression, Microarray, Pathways, Software, aCGH
Version	1.30.0
In Bioconductor since	BioC 2.10 (R-2.15) (7 years)
License	GPL (>= 2)
Depends	Biobase, CGHbase, methods, mvtnorm
Imports	corpcor (>= 1.6.2), graphics, igraph, limma, marray, MASS, penalized, quadprog, snowfall, stats
LinkingTo
Suggests	CGHcall
SystemRequirements
Enhances
URL	http://www.few.vu.nl/~wvanwie
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sigaR_1.30.0.tar.gz
Windows Binary	sigaR_1.30.0.zip
Mac OS X 10.11 (El Capitan)	sigaR_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sigaR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sigaR
Package Short Url	http://bioconductor.org/packages/sigaR/
Package Downloads Report	Download Stats