rnaSeqMap

DOI: 10.18129/B9.bioc.rnaSeqMap    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see rnaSeqMap.

rnaSeq secondary analyses

Bioconductor version: 3.8

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("rnaSeqMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaSeqMap")

 

PDF	R Script	rnaSeqMap primer
PDF		Reference Manual

Details

biocViews	Annotation, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, ReportWriting, SAGE, Sequencing, Software, Transcription, Visualization
Version	2.40.1
In Bioconductor since	BioC 2.7 (R-2.12) (8.5 years)
License	GPL-2
Depends	R (>= 2.11.0), methods, Biobase, Rsamtools, GenomicAlignments
Imports	GenomicRanges, IRanges, edgeR, DESeq, DBI
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Depends On Me	ampliQueso
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rnaSeqMap_2.40.1.tar.gz
Windows Binary	rnaSeqMap_2.40.1.zip
Mac OS X 10.11 (El Capitan)	rnaSeqMap_2.40.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rnaSeqMap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rnaSeqMap
Package Short Url	http://bioconductor.org/packages/rnaSeqMap/
Package Downloads Report	Download Stats