rWikiPathways

DOI: 10.18129/B9.bioc.rWikiPathways    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see rWikiPathways.

rWikiPathways - R client library for the WikiPathways API

Bioconductor version: 3.8

Use this package to interface with the WikiPathways API.

Author: Egon Willighagen [aut, cre] , Alex Pico [aut]

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>, Alexander Pico <alex.pico at gladstone.ucsf.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("rWikiPathways")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rWikiPathways")

 

HTML	R Script	1. Overview
HTML	R Script	2. rWikiPathways and BridgeDbR
HTML	R Script	3. rWikiPathways and RCy3
HTML	R Script	4. Pathway Analysis
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization
Version	1.2.1
In Bioconductor since	BioC 3.7 (R-3.5) (1 year)
License	MIT + file LICENSE
Depends	R (>= 3.5)
Imports	caTools, httr, RJSONIO, utils, XML
LinkingTo
Suggests	testthat, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/wikipathways/rwikipathways
BugReports	https://github.com/wikipathways/rwikipathways/issues
Depends On Me
Imports Me
Suggests Me	TRONCO
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rWikiPathways_1.2.1.tar.gz
Windows Binary	rWikiPathways_1.2.1.zip
Mac OS X 10.11 (El Capitan)	rWikiPathways_1.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rWikiPathways
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rWikiPathways
Package Short Url	http://bioconductor.org/packages/rWikiPathways/
Package Downloads Report	Download Stats