pandaR

DOI: 10.18129/B9.bioc.pandaR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see pandaR.

PANDA Algorithm

Bioconductor version: 3.8

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Author: Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>, Dan Schlauch <dschlauch at fas.harvard.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("pandaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pandaR")

 

HTML	R Script	pandaR Package
PDF		Reference Manual

Details

biocViews	GeneExpression, GeneRegulation, GraphAndNetwork, Microarray, Network, NetworkInference, Software, StatisticalMethod, Transcription
Version	1.14.0
In Bioconductor since	BioC 3.1 (R-3.2) (4 years)
License	GPL-2
Depends	R (>= 3.0.0), methods, Biobase, BiocGenerics
Imports	matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit, hexbin
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pandaR_1.14.0.tar.gz
Windows Binary	pandaR_1.14.0.zip
Mac OS X 10.11 (El Capitan)	pandaR_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pandaR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pandaR
Package Short Url	http://bioconductor.org/packages/pandaR/
Package Downloads Report	Download Stats