omicsPrint

DOI: 10.18129/B9.bioc.omicsPrint    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see omicsPrint.

Cross omic genetic fingerprinting

Bioconductor version: 3.8

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Author: Maarten van Iterson [aut], Davy Cats [cre]

Maintainer: Davy Cats <davycats.dc at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("omicsPrint")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("omicsPrint")

 

HTML	R Script	omicsPrint: detection of data linkage errors in multiple omics studies
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, Epigenetics, GeneticVariability, Genetics, ImmunoOncology, QualityControl, Software, Transcription, Transcriptomics
Version	1.2.1
In Bioconductor since	BioC 3.7 (R-3.5) (1 year)
License	GPL (>= 2)
Depends	R (>= 3.5), MASS
Imports	methods, matrixStats, graphics, stats, SummarizedExperiment, MultiAssayExperiment, RaggedExperiment
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	omicsPrint_1.2.1.tar.gz
Windows Binary	omicsPrint_1.2.1.zip
Mac OS X 10.11 (El Capitan)	omicsPrint_1.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/omicsPrint
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/omicsPrint
Package Short Url	http://bioconductor.org/packages/omicsPrint/
Package Downloads Report	Download Stats