flowMap

DOI: 10.18129/B9.bioc.flowMap    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see flowMap.

Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test

Bioconductor version: 3.8

flowMap quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The method is able to map cell populations of different size, shape, and proportion across multiple flow cytometry samples. The algorithm can be incorporate in any flow cytometry work flow that requires accurat quantification of similarity between cell populations.

Author: Chiaowen Joyce Hsiao, Yu Qian, and Richard H. Scheuermann

Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1 at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("flowMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowMap")

 

PDF	R Script	Mapping cell populations in flow cytometry data flowMap-FR
PDF		Reference Manual
Text		NEWS

Details

biocViews	FlowCytometry, ImmunoOncology, MultipleComparison, Software
Version	1.20.1
In Bioconductor since	BioC 2.13 (R-3.0) (5.5 years)
License	GPL (>=2)
Depends	R (>= 3.0.1), ade4 (>= 1.5-2), doParallel (>= 1.0.3), abind (>= 1.4.0), reshape2 (>= 1.2.2), scales (>= 0.2.3), Matrix (>= 1.1-4), methods (>= 2.14)
Imports
LinkingTo
Suggests	BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowMap_1.20.1.tar.gz
Windows Binary	flowMap_1.20.1.zip
Mac OS X 10.11 (El Capitan)	flowMap_1.20.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowMap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowMap
Package Short Url	http://bioconductor.org/packages/flowMap/
Package Downloads Report	Download Stats