factDesign

DOI: 10.18129/B9.bioc.factDesign    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see factDesign.

Factorial designed microarray experiment analysis

Bioconductor version: 3.8

This package provides a set of tools for analyzing data from a factorial designed microarray experiment, or any microarray experiment for which a linear model is appropriate. The functions can be used to evaluate tests of contrast of biological interest and perform single outlier detection.

Author: Denise Scholtens

Maintainer: Denise Scholtens <dscholtens at northwestern.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("factDesign")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("factDesign")

 

PDF	R Script	factDesign
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Software
Version	1.58.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14 years)
License	LGPL
Depends	Biobase(>= 2.5.5)
Imports	stats
LinkingTo
Suggests	affy, genefilter, multtest
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	factDesign_1.58.0.tar.gz
Windows Binary	factDesign_1.58.0.zip
Mac OS X 10.11 (El Capitan)	factDesign_1.58.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/factDesign
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/factDesign
Package Short Url	http://bioconductor.org/packages/factDesign/
Package Downloads Report	Download Stats