RchyOptimyx

DOI: 10.18129/B9.bioc.RchyOptimyx    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RchyOptimyx.

Optimyzed Cellular Hierarchies for Flow Cytometry

Bioconductor version: 3.8

Constructs a hierarchy of cells using flow cytometry for maximization of an external variable (e.g., a clinical outcome or a cytokine response).

Author: Adrin Jalali, Nima Aghaeepour

Maintainer: Adrin Jalali <adrin.jalali at gmail.com>, Nima Aghaeepour <naghaeep at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RchyOptimyx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RchyOptimyx")

 

PDF	R Script	flowType package
PDF		Reference Manual
Text		NEWS

Details

biocViews	FlowCytometry, Software
Version	2.22.0
In Bioconductor since	BioC 2.10 (R-2.15) (7 years)
License	Artistic-2.0
Depends	R (>= 2.10)
Imports	Rgraphviz, sfsmisc, graphics, methods, graph, grDevices, flowType(>= 2.0.0)
LinkingTo
Suggests	flowCore
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RchyOptimyx_2.22.0.tar.gz
Windows Binary	RchyOptimyx_2.22.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	RchyOptimyx_2.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RchyOptimyx
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RchyOptimyx
Package Short Url	http://bioconductor.org/packages/RchyOptimyx/
Package Downloads Report	Download Stats