OGSA

DOI: 10.18129/B9.bioc.OGSA    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see OGSA.

Outlier Gene Set Analysis

Bioconductor version: 3.8

OGSA provides a global estimate of pathway deregulation in cancer subtypes by integrating the estimates of significance for individual pathway members that have been identified by outlier analysis.

Author: Michael F. Ochs <ochsm at tcnj.edu>

Maintainer: Michael F. Ochs <ochsm at tcnj.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("OGSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OGSA")

 

PDF	R Script	OGSA Users Manual
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, GeneExpression, Microarray, Software
Version	1.12.0
In Bioconductor since	BioC 3.2 (R-3.2) (3.5 years)
License	GPL (== 2)
Depends	R (>= 3.2.0)
Imports	gplots (>= 2.8.0), limma(>= 3.18.13), Biobase
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OGSA_1.12.0.tar.gz
Windows Binary	OGSA_1.12.0.zip
Mac OS X 10.11 (El Capitan)	OGSA_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OGSA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OGSA
Package Short Url	http://bioconductor.org/packages/OGSA/
Package Downloads Report	Download Stats