MethTargetedNGS

DOI: 10.18129/B9.bioc.MethTargetedNGS    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MethTargetedNGS.

Perform Methylation Analysis on Next Generation Sequencing Data

Bioconductor version: 3.8

Perform step by step methylation analysis of Next Generation Sequencing data.

Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MethTargetedNGS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethTargetedNGS")

 

PDF	R Script	Introduction to MethTargetedNGS
PDF		Reference Manual

Details

biocViews	Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software
Version	1.14.0
In Bioconductor since	BioC 3.1 (R-3.2) (4 years)
License	Artistic-2.0
Depends	R (>= 3.1.2), stringr, seqinr, gplots, Biostrings
Imports
LinkingTo
Suggests
SystemRequirements	HMMER3
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MethTargetedNGS_1.14.0.tar.gz
Windows Binary	MethTargetedNGS_1.14.0.zip
Mac OS X 10.11 (El Capitan)	MethTargetedNGS_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MethTargetedNGS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MethTargetedNGS
Package Short Url	http://bioconductor.org/packages/MethTargetedNGS/
Package Downloads Report	Download Stats