MIMOSA

DOI: 10.18129/B9.bioc.MIMOSA    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MIMOSA.

Mixture Models for Single-Cell Assays

Bioconductor version: 3.8

Modeling count data using Dirichlet-multinomial and beta-binomial mixtures with applications to single-cell assays.

Author: Greg Finak <gfinak at fhcrc.org>

Maintainer: Greg Finak <gfinak at fhcrc.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MIMOSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MIMOSA")

 

PDF	R Script	MIMOSA: Mixture Models For Single Cell Assays
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version	1.20.1
In Bioconductor since	BioC 2.14 (R-3.1) (5 years)
License	Artistic-2.0
Depends	R (>= 3.0.2), MASS, plyr, reshape, Biobase, ggplot2
Imports	methods, Formula, data.table, pracma, MCMCpack, coda, modeest, testthat, Rcpp, scales
LinkingTo	Rcpp, RcppArmadillo
Suggests	parallel, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MIMOSA_1.20.1.tar.gz
Windows Binary	MIMOSA_1.20.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	MIMOSA_1.20.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MIMOSA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MIMOSA
Package Short Url	http://bioconductor.org/packages/MIMOSA/
Package Downloads Report	Download Stats