GenomicDataCommons

DOI: 10.18129/B9.bioc.GenomicDataCommons    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GenomicDataCommons.

NIH / NCI Genomic Data Commons Access

Bioconductor version: 3.8

Programmatically access the NIH / NCI Genomic Data Commons RESTful service.

Author: Martin Morgan [aut], Sean Davis [aut, cre]

Maintainer: Sean Davis <seandavi at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("GenomicDataCommons")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicDataCommons")

 

HTML	R Script	Introduction to Accessing the NCI Genomic Data Commons
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Sequencing, Software
Version	1.6.0
In Bioconductor since	BioC 3.5 (R-3.4) (2 years)
License	Artistic-2.0
Depends	R (>= 3.4.0), magrittr
Imports	stats, httr, xml2, jsonlite, utils, lazyeval, readr, GenomicRanges, IRanges, dplyr, rappdirs, SummarizedExperiment, S4Vectors
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools
SystemRequirements
Enhances
URL	https://bioconductor.org/packages/GenomicDataCommons http://github.com/Bioconductor/GenomicDataCommons
BugReports	https://github.com/Bioconductor/GenomicDataCommons/issues/new
Depends On Me
Imports Me	GDCRNATools, TCGAutils
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GenomicDataCommons_1.6.0.tar.gz
Windows Binary	GenomicDataCommons_1.6.0.zip
Mac OS X 10.11 (El Capitan)	GenomicDataCommons_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GenomicDataCommons
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GenomicDataCommons
Package Short Url	http://bioconductor.org/packages/GenomicDataCommons/
Package Downloads Report	Download Stats