Category

DOI: 10.18129/B9.bioc.Category    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see Category.

Category Analysis

Bioconductor version: 3.8

A collection of tools for performing category (gene set enrichment) analysis.

Author: Robert Gentleman [aut], Seth Falcon [ctb], Deepayan Sarkar [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Category")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Category")

 

PDF	R Script	Using Categories to Analyze Microarray Data
PDF	R Script	Using Chromosome Bands as Categories
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, GO, GeneSetEnrichment, Pathways, Software
Version	2.48.1
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14 years)
License	Artistic-2.0
Depends	methods, stats4, BiocGenerics, AnnotationDbi, Biobase, Matrix
Imports	utils, stats, graph, RBGL, GSEABase, genefilter, annotate, DBI
LinkingTo
Suggests	EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db
SystemRequirements
Enhances
URL
Depends On Me	GOstats, PCpheno
Imports Me	categoryCompare, cellHTS2, eisa, gCMAP, interactiveDisplay, meshr, miRLAB, PCpheno, phenoTest, ppiStats, RDAVIDWebService, ReportingTools
Suggests Me	BiocCaseStudies, GSEAlm, MmPalateMiRNA, qpgraph, RnBeads
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Category_2.48.1.tar.gz
Windows Binary	Category_2.48.1.zip
Mac OS X 10.11 (El Capitan)	Category_2.48.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Category
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Category
Package Short Url	http://bioconductor.org/packages/Category/
Package Downloads Report	Download Stats